annotation

[Playing with Data] 607 pylori part III: Start digging

Hello Folks, it's been a while! I thought it would be time to continue this big Helicobacter pylori genomes experiment and keep the blog going on. We left with the previous post on preparing the data for our analyses. The main next step will be re-annotating all the genomes in…

AdrienNovember 14, 2017

Bio-informatic

Fetching information from NCBI directly from the command line

I recently (re)discovered the edirect software package published on NCBI. As described on the website this "software suite that enables users to use the UNIX command line to directly access NCBI databases, as well as to parse and format the data to create customized downloads". How does it work? Basically…

AdrienJuly 26, 2016

[Playing with Data] 607 pylori part III: Start digging

Fetching information from NCBI directly from the command line

Interesting Publication