binning

Bio-informatic Play with Data

[Playing with Data] Looking at a Fish pathogen genome

In this blog note I will use some of the techniques I used in my previous post to look at a recently published dataset. Last year I came across a study by the Institute for Veterinary Pathology, in Zürich, Switzerland describing a bacterial pathogen of fish. Aquaculture is a big…

AdrienSeptember 5, 2016

Bio-informatic

Metagenome part 3: Binning the reads – the easy part

In the previous article we assembled a first version of the metagenome, using a fast assembler creating a lot of rather small contigs. We need now to separate these reads according to the different genomes present in the assembly: this is called binning. To tease apart the different genomes we…

AdrienJanuary 7, 2016

[Playing with Data] Looking at a Fish pathogen genome

Metagenome part 3: Binning the reads – the easy part

Interesting Publication