Pathogens

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Microbial Advent Calendar – 09 Pine Microbiome

Belated day 09 of the Microbial Advent Calendar, today we have a look at the Pine Microbiome. Trees are covered with bacteria and in some cases are intimately associated with some, often at the root level. Endophytic bacteria, located within the plant for at least part of its life cycle…

AdrienDecember 10, 2017

Bio-informatic [PwD] H. pylori

[Playing with data] 607 pylori part I : the introduction

Every story or study needs an introduction to give some context to what we are look at. When I first started writing the introduction about Helicobacter pylori, I realised quite quickly that my first attempts were massively paraphrasing again and again Wikipedia's summary. Because the Wikipedia article contains most of…

AdrienApril 10, 2017

Bio-informatic Play with Data

[Playing with Data] Looking at a Fish pathogen genome

In this blog note I will use some of the techniques I used in my previous post to look at a recently published dataset. Last year I came across a study by the Institute for Veterinary Pathology, in Zürich, Switzerland describing a bacterial pathogen of fish. Aquaculture is a big…

AdrienSeptember 5, 2016

Microbial Advent Calendar – 09 Pine Microbiome

[Playing with data] 607 pylori part I : the introduction

[Playing with Data] Looking at a Fish pathogen genome

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